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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_4068389_4090257_F

Intron Information:

Intron Rank:
133559
Intron Class:
major
Intron Phase:
Intron Coordinates:
4068389 - 4090257
Intron Length:
21869

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTAAC
U12 Branch Point Sequence:
ACCTCTGTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
69.7
41.3
Major BPS
62.2
0.3
1.2
65
38.7
Major PPT
82.1
0.72
0.7
76.4
25.6
Minor 5ss
39.1
-1.2
3
51.7
45
Minor BPS
54.6
0.14
2
64.77
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021835
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042517
4068231 - 4103271
35041