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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_407241_407633_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
407241 - 407633
Intron Length:
393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCATCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TCCCCTTTCATC
Flanking Amino Acid:
KPSDCLPRWKVAILIPFRNR
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.8
43.8
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
78.2
0.63
0.8
70
35.5
Minor 5ss
33.3
-1.9
2.8
39.7
45.9
Minor BPS
49.9
-0
1.7
58.67
41.4

Associated Gene:

Gene:
B4GALT5
Ensembl Gene ID:
ENSAPLG00000015618
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016285
398367 - 411629
13263