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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_408758_408954_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
408758 - 408954
Intron Length:
197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGCACT
5'SS Class:
major
3'SS Sequence:
TTCTCCCCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
CCACACTGACCC
Flanking Amino Acid:
FAAKLDKYMYLLPYNEFFGG
Intron Amino Acid Position:
322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.47
1.1
68.7
42
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
79.8
0.67
0.7
77.5
24.4
Minor 5ss
44.9
-0.5
2.9
69.2
40.9
Minor BPS
42.4
-0.5
1.8
46.55
41.9

Associated Gene:

Gene:
B4GALT5
Ensembl Gene ID:
ENSAPLG00000015618
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016285
398367 - 411629
13263