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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_4090499_4102616_F

Intron Information:

Intron Rank:
133548
Intron Class:
major
Intron Phase:
Intron Coordinates:
4090499 - 4102616
Intron Length:
12118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCACT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTGATTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
GTGCCATTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
75.3
40.8
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
80.7
0.69
0.9
73.8
40
Minor 5ss
40.6
-1
3.2
58.1
46.3
Minor BPS
55.5
0.04
1.7
59.09
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021835
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042517
4068231 - 4103271
35041
ENSAPLT00000039063
4068231 - 4132172
63942
ENSAPLT00000017653
4068231 - 4113603
45373