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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_409078_409530_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
409078 - 409530
Intron Length:
453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGGCT
5'SS Class:
major
3'SS Sequence:
CTTCCCAATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTGATTTTACTT
Flanking Amino Acid:
WGGEDDDLWNRVQYAGYSVT
Intron Amino Acid Position:
363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
64
40.4
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
72.9
0.52
0.9
66.8
33
Minor 5ss
30.1
-2.3
3.8
47.7
48
Minor BPS
54.6
0.22
1.6
71.31
40.8

Associated Gene:

Gene:
B4GALT5
Ensembl Gene ID:
ENSAPLG00000015618
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016285
398367 - 411629
13263