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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_4126287_4126376_F

Intron Information:

Intron Rank:
133550
Intron Class:
major
Intron Phase:
Intron Coordinates:
4126287 - 4126376
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTCA
5'SS Class:
strong_major
3'SS Sequence:
TGTCCTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CTGACTTCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
79.6
29.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
83.6
0.76
0.8
81.1
30.9
Minor 5ss
40.6
-1.1
2.7
51.2
45.1
Minor BPS
54.7
0.23
1.6
68.4
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021835
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021334
4126203 - 4133521
7319