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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_4249924_4260145_R

Intron Information:

Intron Rank:
135141
Intron Class:
major
Intron Phase:
Intron Coordinates:
4249924 - 4260145
Intron Length:
10222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTTAT
5'SS Class:
major
3'SS Sequence:
TCTCTCTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTAAAT
U12 Branch Point Sequence:
CTTTGTGTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
77.7
33.3
Major BPS
67.2
0.43
1.2
73.3
39.1
Major PPT
81.2
0.7
0.7
75.9
26.2
Minor 5ss
43.1
-0.8
2.9
54.7
43.6
Minor BPS
49.2
0.02
2.4
74.65
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020068
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048249
4243794 - 4260343
16550