Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_4272590_4283262_R

Intron Information:

Intron Rank:

148379

Intron Class:

major

Intron Phase:

Intron Coordinates:

4272590 - 4283262

Intron Length:

10673

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGGACA

5'SS Class:

strong_major

3'SS Sequence:

AACTTTTCTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTCAT

U12 Branch Point Sequence:

ACAGCCTGAACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.5

0.86

0.8

77.5

32.3

Major BPS

87.4

0.93

0.9

87.9

29.5

Major PPT

79.5

0.66

0.9

73.7

35.9

Minor 5ss

27.1

-2.6

2.9

31.6

42.4

Minor BPS

0.42

1.6

72.26

44.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027208

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019144

4272534 - 4284450

11917