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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_4310170_4316306_R

Intron Information:

Intron Rank:
131906
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
4310170 - 4316306
Intron Length:
6137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
GGCTTGGTGAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTAGAC
U12 Branch Point Sequence:
TGATTTAGACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
82.1
31
Major BPS
69.3
0.48
1.1
66.7
40
Major PPT
48.9
-0
1.2
47
44.2
Minor 5ss
32.6
-2
3.1
42.1
45
Minor BPS
42.9
-0.5
1.8
53.35
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018180
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034680
4296709 - 4316660
19952