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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_4374308_4376208_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4374308 - 4376208
Intron Length:
1901

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
GCTCTTTTCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTTAT
U12 Branch Point Sequence:
GTTCCCTTATTT
Flanking Amino Acid:
GPWTKEEDQKVIELVKKYGT
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.4
1.05
0.8
80.7
33.8
Major BPS
66.5
0.41
1.1
57.2
40.1
Major PPT
69
0.43
1
69.7
34.5
Minor 5ss
34.5
-1.8
2.8
42.4
44.3
Minor BPS
68.1
0.65
1.6
82.47
38.8

Associated Gene:

Gene:
MYBL2
Ensembl Gene ID:
ENSAPLG00000005213
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047236
4365082 - 4378221
13140
ENSAPLT00000036769
4363782 - 4378221
14440
ENSAPLT00000005411
4363782 - 4378221
14440