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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_4376302_4377845_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4376302 - 4377845
Intron Length:
1544

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
GCTACTCTGATT
Flanking Amino Acid:
RCKVKWTQEENRSDQQCQYR
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
79
0.72
1
69
38.9
Major PPT
86.1
0.81
0.7
79.7
32.2
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
48.7
-0
1.7
64.94
39.9

Associated Gene:

Gene:
MYBL2
Ensembl Gene ID:
ENSAPLG00000005213
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036769
4363782 - 4378221
14440