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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_4385383_4385968_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4385383 - 4385968
Intron Length:
586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTTA
5'SS Class:
major
3'SS Sequence:
TCCTTTCCTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
TTTTCCTTTCCT
Flanking Amino Acid:
QVVEFKKLNQEHDTDTSEAG
Intron Amino Acid Position:
425

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
78.6
31
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
74.9
0.56
1
79.3
26.8
Minor 5ss
49.9
-0
2.4
67.2
43.9
Minor BPS
51.2
0.12
3.7
92.33
36.7

Associated Gene:

Gene:
IFT52
Ensembl Gene ID:
ENSAPLG00000005680
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005906
4384335 - 4396518
12184