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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_4390650_4392609_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4390650 - 4392609
Intron Length:
1960

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGATTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTATTGATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TATTCTTTATTG
Flanking Amino Acid:
RPILAFYQHESKGGRMAALG
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
77.7
31.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
75.4
0.57
0.9
73
36.4
Minor 5ss
48.6
-0.1
2.8
67.6
43.7
Minor BPS
64.3
0.31
1.6
68.17
40

Associated Gene:

Gene:
IFT52
Ensembl Gene ID:
ENSAPLG00000005680
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005906
4384335 - 4396518
12184