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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_4392737_4393610_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4392737 - 4393610
Intron Length:
874

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
TATTTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TGTTTTGTATTT
Flanking Amino Acid:
TDEDGSIRNLQGLTFVYPFG
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
79.3
34.5
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
89.9
0.9
0.7
85
29.3
Minor 5ss
40.8
-1
3.4
63.8
41.6
Minor BPS
47.8
-0
2.2
71.36
40.7

Associated Gene:

Gene:
IFT52
Ensembl Gene ID:
ENSAPLG00000005680
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005906
4384335 - 4396518
12184