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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_4394937_4395193_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4394937 - 4395193
Intron Length:
257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTTTCTGGATG
Flanking Amino Acid:
GPREKFSAAEFLVLKKFLED
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.5
37
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
80.2
0.68
0.8
77.9
36.6
Minor 5ss
34
-1.8
3.3
48.8
47
Minor BPS
63.1
0.27
1.5
70.54
36.9

Associated Gene:

Gene:
IFT52
Ensembl Gene ID:
ENSAPLG00000005680
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005906
4384335 - 4396518
12184