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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_4395282_4395604_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4395282 - 4395604
Intron Length:
323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGCG
5'SS Class:
strong_major
3'SS Sequence:
GATCTATCCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
GTTTTCTTACTG
Flanking Amino Acid:
KRLRGNWRILSLKDEITSEK
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
66.5
39.1
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
65.2
0.34
0.9
58.5
37.1
Minor 5ss
24.1
-3
3.2
29.4
43.5
Minor BPS
62.6
0.26
1.7
67.31
41

Associated Gene:

Gene:
IFT52
Ensembl Gene ID:
ENSAPLG00000005680
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005906
4384335 - 4396518
12184