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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_4398033_4398422_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4398033 - 4398422
Intron Length:
390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAGGTGGT
5'SS Class:
major
3'SS Sequence:
TCTTTCTATACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAGAT
U12 Branch Point Sequence:
TCTTTCTATACA
Flanking Amino Acid:
KRRLGAKTDFLEIKNHVFFS
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66
0.38
1.2
61.8
42.9
Major BPS
71.4
0.53
1
67
39.8
Major PPT
85.1
0.79
0.8
80.5
30.5
Minor 5ss
35.6
-1.6
3.6
54
44.7
Minor BPS
55.1
0.15
2
70.34
42.1

Associated Gene:

Gene:
SGK2
Ensembl Gene ID:
ENSAPLG00000006291
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006549
4396656 - 4417457
20802