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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_4405801_4406623_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4405801 - 4406623
Intron Length:
823

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
ATCTGTTTCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
ACATGATCAACC
Flanking Amino Acid:
FVLDYVNGGELFFHLQRERC
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.7
85.8
24.1
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
74.9
0.56
0.8
73.2
36.6
Minor 5ss
30.6
-2.2
2.5
34.4
41.2
Minor BPS
44.9
-0.4
2.1
55.28
42.4

Associated Gene:

Gene:
SGK2
Ensembl Gene ID:
ENSAPLG00000006291
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006549
4396656 - 4417457
20802