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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_4406756_4407050_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4406756 - 4407050
Intron Length:
295

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTTGCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTAAT
U12 Branch Point Sequence:
TTTGCCTGAAAA
Flanking Amino Acid:
HKKTILKKKEQNHIMAERNV
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
74.4
41.9
Major BPS
73.1
0.57
1
71.9
31.3
Major PPT
73.6
0.53
1
69.1
41.8
Minor 5ss
43.9
-0.7
2.8
58.1
46.5
Minor BPS
65.6
0.49
1.7
77.84
38.5

Associated Gene:

Gene:
SGK2
Ensembl Gene ID:
ENSAPLG00000006291
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006549
4396656 - 4417457
20802