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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_4407785_4408311_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4407785 - 4408311
Intron Length:
527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCTCC
5'SS Class:
major
3'SS Sequence:
TCTTGCTCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAC
U12 Branch Point Sequence:
TCTTGCTCAACA
Flanking Amino Acid:
NINLGPSANPNAKPTDFDFL
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
69.5
36.3
Major BPS
69.5
0.49
1
71.3
30.3
Major PPT
74.8
0.56
0.9
69.9
35.4
Minor 5ss
46.8
-0.3
2.7
60.7
37.9
Minor BPS
61.8
0.37
2
75.44
42.2

Associated Gene:

Gene:
SGK2
Ensembl Gene ID:
ENSAPLG00000006291
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006549
4396656 - 4417457
20802