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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_4408362_4408845_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4408362 - 4408845
Intron Length:
484

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATCC
5'SS Class:
strong_major
3'SS Sequence:
TCCTCCTCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACCAAA
U12 Branch Point Sequence:
TAATACCAAACA
Flanking Amino Acid:
RSRSPDTSAQPPTPADNINL
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.8
74.7
29.4
Major BPS
54.9
0.12
1.2
63
32
Major PPT
81.3
0.7
0.7
72.9
31.9
Minor 5ss
33.8
-1.8
3
42.5
44.5
Minor BPS
47.3
-0.2
2.1
63.68
41.7

Associated Gene:

Gene:
SGK2
Ensembl Gene ID:
ENSAPLG00000006291
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006549
4396656 - 4417457
20802