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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_4408904_4409934_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4408904 - 4409934
Intron Length:
1031

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
TTCTCTTCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAA
U12 Branch Point Sequence:
TTGTCAATACTT
Flanking Amino Acid:
IKASGSRLCSYAERVAFLMD
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
0.9
76
32.7
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
83.5
0.75
0.7
76.7
32
Minor 5ss
34.8
-1.7
2.8
45.5
37.1
Minor BPS
48.5
-0
2.1
73.95
43

Associated Gene:

Gene:
SGK2
Ensembl Gene ID:
ENSAPLG00000006291
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006549
4396656 - 4417457
20802