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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_4410005_4414723_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4410005 - 4414723
Intron Length:
4719

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAACCACC
5'SS Class:
major
3'SS Sequence:
ACTTTCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAA
U12 Branch Point Sequence:
GCTTCTCCAACT
Flanking Amino Acid:
PSSTALGKTKELIRHGRERI
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.6
0.39
1.3
60.6
44.5
Major BPS
55.5
0.14
1.3
66.7
39.7
Major PPT
76.3
0.59
0.8
70.2
30
Minor 5ss
45.8
-0.4
2.6
53.8
43.2
Minor BPS
53.4
0.19
1.9
73.74
43

Associated Gene:

Gene:
SGK2
Ensembl Gene ID:
ENSAPLG00000006291
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006549
4396656 - 4417457
20802