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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_4421540_4422212_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4421540 - 4422212
Intron Length:
673

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGCCCG
5'SS Class:
major
3'SS Sequence:
TGTCTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
ACGGTTTCCATT
Flanking Amino Acid:
AGWNVTNAIQGMFVLGLPYA
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.1
57.4
47.3
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
81.1
0.7
0.8
73.6
37
Minor 5ss
37.1
-1.5
3.2
48.5
47.2
Minor BPS
39.8
-0.7
1.8
48.67
39.8

Associated Gene:

Gene:
SLC32A1
Ensembl Gene ID:
ENSAPLG00000007083
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007346
4419838 - 4423006
3169