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Intron Name: Anas_platyrhynchos_platyrhynchos_21_4461706_4463324_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4461706 - 4463324

Intron Length:

1619

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGATAG

5'SS Class:

strong_major

3'SS Sequence:

TTTTCTTGTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTGAA

U12 Branch Point Sequence:

AGTGCTTTATTC

Flanking Amino Acid:

KDKVEKNQAEPSKVVKVHAS

Intron Amino Acid Position:

547

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.4

0.86

0.8

73.8

Major BPS

72.1

0.55

1.2

63.4

44.3

Major PPT

88.6

0.87

0.8

88.4

28.7

Minor 5ss

31.8

-2.1

37.5

47.2

Minor BPS

52.2

0.05

1.7

60.91

39.1

Associated Gene:

Gene:

ARHGAP40

Ensembl Gene ID:

ENSAPLG00000007202

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029562

4459419 - 4483158

23740

ENSAPLT00000029124

4459419 - 4494572

35154

ENSAPLT00000007501

4460153 - 4474115

13963

ENSAPLT00000046290

4459419 - 4474115

14697