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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_4463945_4464728_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4463945 - 4464728
Intron Length:
784

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TCCCTCTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATTAA
U12 Branch Point Sequence:
AAGATATTAAGT
Flanking Amino Acid:
LPEPNRNTLKALLEFLSKVV
Intron Amino Acid Position:
431

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
66.7
0.42
1
58.1
38.5
Major PPT
78.3
0.64
0.7
76.3
25.8
Minor 5ss
37.8
-1.4
3
49.8
46.4
Minor BPS
46.9
-0.1
1.9
61.19
42.2

Associated Gene:

Gene:
ARHGAP40
Ensembl Gene ID:
ENSAPLG00000007202
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029124
4459419 - 4494572
35154
ENSAPLT00000007501
4460153 - 4474115
13963
ENSAPLT00000046290
4459419 - 4474115
14697
ENSAPLT00000029562
4459419 - 4483158
23740