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Intron Name: Anas_platyrhynchos_platyrhynchos_21_4465718_4465979_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4465718 - 4465979

Intron Length:

262

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGAGCT

5'SS Class:

strong_major

3'SS Sequence:

ATCTGTTTTATAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAATAAA

U12 Branch Point Sequence:

ATGTAATAAATT

Flanking Amino Acid:

RVSGSQTRIKSLEQKLERDF

Intron Amino Acid Position:

350

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.5

0.79

0.9

74.3

34.2

Major BPS

70.8

0.52

70.6

31.6

Major PPT

78.2

0.63

0.8

72.6

37.1

Minor 5ss

39.2

-1.2

3.4

56.9

47.4

Minor BPS

47.6

-0.1

68.45

42.5

Associated Gene:

Gene:

ARHGAP40

Ensembl Gene ID:

ENSAPLG00000007202

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029124

4459419 - 4494572

35154

ENSAPLT00000007501

4460153 - 4474115

13963

ENSAPLT00000046290

4459419 - 4474115

14697

ENSAPLT00000029562

4459419 - 4483158

23740