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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_4466058_4466185_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4466058 - 4466185
Intron Length:
128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
CCCCTTCTAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAG
U12 Branch Point Sequence:
CCCCTTCTAATA
Flanking Amino Acid:
NTKVPLLLQALLSCLEKRGL
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
82
32.3
Major BPS
61.8
0.29
1.5
69.7
35.5
Major PPT
68.8
0.42
0.8
64.9
29.3
Minor 5ss
48.3
-0.1
2.8
72.9
37.4
Minor BPS
45.4
-0.3
1.6
47.85
37.3

Associated Gene:

Gene:
ARHGAP40
Ensembl Gene ID:
ENSAPLG00000007202
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029124
4459419 - 4494572
35154
ENSAPLT00000007501
4460153 - 4474115
13963
ENSAPLT00000046290
4459419 - 4474115
14697
ENSAPLT00000029562
4459419 - 4483158
23740