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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_4466781_4467403_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4466781 - 4467403
Intron Length:
623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGCATA
5'SS Class:
major
3'SS Sequence:
TGTTTTCCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
TTGTACTGAACC
Flanking Amino Acid:
RRIMDGNTLTKFKIYKGRLG
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
71.3
40.3
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
83.6
0.76
0.7
82.3
29.8
Minor 5ss
45.9
-0.4
2.9
67.6
43.1
Minor BPS
66.4
0.49
1.7
76.66
39

Associated Gene:

Gene:
ARHGAP40
Ensembl Gene ID:
ENSAPLG00000007202
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046290
4459419 - 4474115
14697
ENSAPLT00000029562
4459419 - 4483158
23740
ENSAPLT00000029124
4459419 - 4494572
35154
ENSAPLT00000007501
4460153 - 4474115
13963