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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_4468230_4469466_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4468230 - 4469466
Intron Length:
1237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTATGTTGA
5'SS Class:
major
3'SS Sequence:
ATTTACTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTGATTTACT
Flanking Amino Acid:
RDIFGVVGSGETVTEKEESS
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
67.6
40.3
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
85
0.79
0.8
81.8
34.9
Minor 5ss
45.2
-0.5
2.5
49.4
46.8
Minor BPS
55.9
0.27
2.3
85.58
40.4

Associated Gene:

Gene:
ARHGAP40
Ensembl Gene ID:
ENSAPLG00000007202
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007501
4460153 - 4474115
13963
ENSAPLT00000046290
4459419 - 4474115
14697
ENSAPLT00000029562
4459419 - 4483158
23740
ENSAPLT00000029124
4459419 - 4494572
35154