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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_4469688_4473647_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4469688 - 4473647
Intron Length:
3960

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGGTTGC
5'SS Class:
major
3'SS Sequence:
CATTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGTCCAT
U12 Branch Point Sequence:
TTCTCGTCCATT
Flanking Amino Acid:
CSLADVKAQEEGEAEAEWLQ
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
64.1
43.4
Major BPS
49.9
-0
1.4
61.8
44.5
Major PPT
83.5
0.75
0.8
80.5
36.7
Minor 5ss
38.7
-1.3
3.1
43.4
44.3
Minor BPS
45.5
-0.2
2.5
71.5
46

Associated Gene:

Gene:
ARHGAP40
Ensembl Gene ID:
ENSAPLG00000007202
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029124
4459419 - 4494572
35154
ENSAPLT00000007501
4460153 - 4474115
13963
ENSAPLT00000046290
4459419 - 4474115
14697
ENSAPLT00000029562
4459419 - 4483158
23740