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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_4503018_4503640_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4503018 - 4503640
Intron Length:
623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGCCC
5'SS Class:
major
3'SS Sequence:
TTGTCTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TGTCCTTTCATT
Flanking Amino Acid:
VFQRLGVSSQGCVDHPIVLT
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.3
0.34
1.3
54
41.7
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
86
0.81
0.8
80.4
31.7
Minor 5ss
36.5
-1.5
3.5
51.8
44.9
Minor BPS
60.3
0.4
1.7
77.88
38.9

Associated Gene:

Gene:
ACTR5
Ensembl Gene ID:
ENSAPLG00000007588
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007884
4502637 - 4512983
10347