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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_4509572_4510937_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4509572 - 4510937
Intron Length:
1366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGGAAA
U12 Branch Point Sequence:
TGCTCTTGGAAA
Flanking Amino Acid:
IAETMQYVLERYPKEQQAIL
Intron Amino Acid Position:
482

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.04
0.7
89.2
17.6
Major BPS
50.3
0.01
1.5
61.7
43.1
Major PPT
86.6
0.82
0.8
81.4
30.6
Minor 5ss
38.3
-1.3
2.9
49
47.2
Minor BPS
49.7
-0
1.6
60.76
39

Associated Gene:

Gene:
ACTR5
Ensembl Gene ID:
ENSAPLG00000007588
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007884
4502637 - 4512983
10347