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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_4550165_4575646_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4550165 - 4575646
Intron Length:
25482

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGATGT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CCCGCTCTGACC
Flanking Amino Acid:
EASLRNDLEEVCYLLKSNIS
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
72.5
39.9
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
85.8
0.81
0.7
80.4
24.9
Minor 5ss
38.3
-1.3
3.4
56.2
48
Minor BPS
45.5
-0.3
1.7
49.3
42

Associated Gene:

Gene:
PPP1R16B
Ensembl Gene ID:
ENSAPLG00000008010
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008355
4549762 - 4586294
36533