About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_4580283_4581771_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4580283 - 4581771
Intron Length:
1489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTGTCTCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGTTCCTTGTCT
Flanking Amino Acid:
NRTDAQGATLLHIAAANGYL
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.5
28.7
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
73
0.52
0.8
65.2
36.3
Minor 5ss
26.7
-2.7
3
27.8
37.9
Minor BPS
53.4
0.19
3.5
88.2
37

Associated Gene:

Gene:
PPP1R16B
Ensembl Gene ID:
ENSAPLG00000008010
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008355
4549762 - 4586294
36533