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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_4583559_4584280_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4583559 - 4584280
Intron Length:
722

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CCGTGTCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
ACAGCTTTGATG
Flanking Amino Acid:
SRRTSSTGSRGKVVRRASLS
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
69.3
35.8
Major BPS
84
0.85
0.9
75
39.9
Major PPT
72.5
0.51
0.9
65.3
36.2
Minor 5ss
28.1
-2.5
3
27.7
36.2
Minor BPS
49.4
-0.1
1.4
48.32
40

Associated Gene:

Gene:
PPP1R16B
Ensembl Gene ID:
ENSAPLG00000008010
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008355
4549762 - 4586294
36533