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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_4592188_4594654_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4592188 - 4594654
Intron Length:
2467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGCG
5'SS Class:
major
3'SS Sequence:
CTTCTCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
AGCTCTTAAACA
Flanking Amino Acid:
VRRQIRSARQVIAIVMDSFT
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
65.8
40.2
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
88.8
0.87
0.7
83.3
25.1
Minor 5ss
26.2
-2.7
3.2
31.7
42.8
Minor BPS
59.5
0.3
1.7
66
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008669
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009020
4591741 - 4597230
5490