About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_4595919_4596275_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4595919 - 4596275
Intron Length:
357

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTCAATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
TGAAATTTAACT
Flanking Amino Acid:
DGIRVTTGSYSFTWTDGKLN
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.7
100
0
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
76.6
0.6
0.9
74.3
35.3
Minor 5ss
31.3
-2.1
4
50.6
45.9
Minor BPS
62.4
0.47
1.5
75.8
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008669
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009020
4591741 - 4597230
5490