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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_4607464_4608302_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4607464 - 4608302
Intron Length:
839

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGGTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTATCCTTCATT
Flanking Amino Acid:
GCGKSTQIPQYLAEAGWTAE
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
79
35.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
86.3
0.82
0.8
80.6
37
Minor 5ss
38
-1.4
3.3
49.5
41.1
Minor BPS
73.7
0.83
1.7
88.75
36.3

Associated Gene:

Gene:
DHX35
Ensembl Gene ID:
ENSAPLG00000008832
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009195
4605780 - 4635805
30026
ENSAPLT00000009193
4605780 - 4635102
29323