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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_4659631_4660540_F

Intron Information:

Intron Rank:
133613
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
4659631 - 4660540
Intron Length:
910

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATTTTTC
5'SS Class:
weak_major
3'SS Sequence:
TATTTCTTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTACTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.1
70.5
34.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.4
0.68
0.8
73.9
36.4
Minor 5ss
59.3
0.31
2.2
70
34.3
Minor BPS
69.6
0.69
1.7
89
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021867
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041932
4658570 - 4661211
2642