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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_4660747_4661092_F

Intron Information:

Intron Rank:
133614
Intron Class:
major
Intron Phase:
Intron Coordinates:
4660747 - 4661092
Intron Length:
346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTCCTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAA
U12 Branch Point Sequence:
AATATCTGAAGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
71.1
37.5
Major BPS
73.3
0.58
0.9
63.4
35.6
Major PPT
77.8
0.63
0.7
70
30.9
Minor 5ss
37.8
-1.4
3
47.1
48.3
Minor BPS
49
-0
1.8
59.53
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021867
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041932
4658570 - 4661211
2642