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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_4674036_4678149_F

Intron Information:

Intron Rank:
140979
Intron Class:
major
Intron Phase:
Intron Coordinates:
4674036 - 4678149
Intron Length:
4114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCGTA
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
CTTCCCTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
81.5
32.7
Major BPS
69.8
0.49
1
61
37.5
Major PPT
85.6
0.8
0.7
79.5
26
Minor 5ss
39.9
-1.1
3.4
55.3
48.9
Minor BPS
69
0.59
1.6
77.2
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025921
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017508
4668113 - 4679007
10895