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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_4700004_4701630_F

Intron Information:

Intron Rank:
143828
Intron Class:
major
Intron Phase:
Intron Coordinates:
4700004 - 4701630
Intron Length:
1627

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
ACTTTCATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTCACGCAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
78.7
35.3
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
80.7
0.69
0.8
74.4
34.3
Minor 5ss
35.3
-1.7
3.8
52.2
46
Minor BPS
43.5
-0.4
2.5
69.13
47.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027510
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024003
4699918 - 4704667
4750