Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_4721766_4728311_F

Intron Information:

Intron Rank:

132411

Intron Class:

major

Intron Phase:

Intron Coordinates:

4721766 - 4728311

Intron Length:

6546

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGCTGC

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTCCTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTTAT

U12 Branch Point Sequence:

ACATCCCGGATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.2

0.71

65.8

41.1

Major BPS

87.7

0.94

0.8

77.7

36.7

Major PPT

94.3

0.5

93.3

15.5

Minor 5ss

51.1

0.04

2.4

67.9

43.4

Minor BPS

47.6

-0.1

1.8

63.6

40.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021140

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047362

4717188 - 4728527

11340