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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_4739247_4751055_F

Intron Information:

Intron Rank:
134690
Intron Class:
major
Intron Phase:
Intron Coordinates:
4739247 - 4751055
Intron Length:
11809

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCAAAA
5'SS Class:
major
3'SS Sequence:
GATCTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
GTTTCATTACTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.2
67.8
39.3
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
82.5
0.73
0.9
76.1
37.6
Minor 5ss
36.9
-1.5
3.2
48.3
47.4
Minor BPS
59.4
0.29
1.9
73.34
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022427
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031852
4731261 - 4751067
19807