Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_4758458_4786068_F

Intron Information:

Intron Rank:

135209

Intron Class:

major

Intron Phase:

Intron Coordinates:

4758458 - 4786068

Intron Length:

27611

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGATT

5'SS Class:

strong_major

3'SS Sequence:

CTCTTCCCGACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTTAG

U12 Branch Point Sequence:

ACTGTGTTGACC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.4

0.93

0.8

87.7

Major BPS

63.7

0.34

1.5

63.4

Major PPT

72.8

0.51

0.9

68.7

31.9

Minor 5ss

32.8

-2

3.3

47.8

47.9

Minor BPS

47.3

-0.2

2.1

58.65

41.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022739

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048452

4757290 - 4786223

28934