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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_4804351_4832572_F

Intron Information:

Intron Rank:
139787
Intron Class:
major
Intron Phase:
Intron Coordinates:
4804351 - 4832572
Intron Length:
28222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTCTC
5'SS Class:
major
3'SS Sequence:
CTGTCCCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
CTGTCCCCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
70.7
39.5
Major BPS
80
0.75
1
78.6
31
Major PPT
68.4
0.41
0.9
62.7
33.2
Minor 5ss
44.9
-0.5
2.8
62
42.6
Minor BPS
54.5
0.14
2
68.41
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025157
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043145
4803946 - 4835214
31269