Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_4927879_4933308_R

Intron Information:

Intron Rank:

149015

Intron Class:

major

Intron Phase:

Intron Coordinates:

4927879 - 4933308

Intron Length:

5430

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGTCAC

5'SS Class:

strong_major

3'SS Sequence:

TTTCTACCTACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGATAAA

U12 Branch Point Sequence:

TTTTTTCTACCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.4

0.81

0.9

75.1

35.1

Major BPS

54.7

0.12

1.2

56.1

37.3

Major PPT

0.77

0.8

77.7

Minor 5ss

36.2

-1.6

2.9

44.9

36.9

Minor BPS

58.5

0.35

1.9

83.74

37.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027642

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029307

4927813 - 4933580

5768