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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_4954994_5015254_F

Intron Information:

Intron Rank:
134815
Intron Class:
major
Intron Phase:
Intron Coordinates:
4954994 - 5015254
Intron Length:
60261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TCCTATTTTGGAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.5
32.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
62.8
0.29
1.7
72.1
37.5
Minor 5ss
32.1
-2
3.1
40.8
45.4
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022502
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038377
4954256 - 5020102
65847