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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_5015583_5019855_F

Intron Information:

Intron Rank:
134816
Intron Class:
major
Intron Phase:
Intron Coordinates:
5015583 - 5019855
Intron Length:
4273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTACCCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTGTTTTACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.5
41.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.8
0.67
0.8
74.3
30.6
Minor 5ss
45.7
-0.5
2.9
61.8
44.9
Minor BPS
60.4
0.31
1.7
72.92
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022502
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038377
4954256 - 5020102
65847